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Rrid:scr_017014

WebAug 14, 2024 · 81 mer distributions using GenomeScope v1.0.0 (GenomeScope, RRID:SCR_017014) [14]. The histogram of 82 k-mer frequencies was estimated with 21 … WebВ рубрике как это работает у них Research Resource Identifiers (RRIDs) [1] научный проект по систематизации общедоступных научных ресурсов изначально в области биоинформатики, а далее и для научных ди...

SciCrunch - Wikipedia

WebSciCrunch is a collaboratively edited knowledge base about scientific resources. It is a community portal for researchers and a content management system for data and databases. It is intended to provide a common source of data to the research community and the data about Research Resource Identifiers (), which can be used in scientific … WebJun 25, 2024 · Jellyfish (RRID:SCR_005491) 30 and genomescope2 (RRID:SCR_017014) 31,32 were used to estimate the size, unique sequence content, and heterozygosity of the O. australiensis KR genome using 17-mers ... e2014hf マニュアル https://smediamoo.com

A chromosome-level genome assembly of Plantago ovata

WebDec 21, 2024 · The histograms of the k -mer occurrences were processed by GenomeScope (GenomeScope, RRID:SCR_017014) [ 26 ], which estimated a genome haploid size of 653 and 616 Mb with ∼71% and 74% of unique content and a heterozygosity level of 0.65% and 0.77% from Illumina and BGI reads, respectively. Assembly of genomes WebApr 14, 2024 · Mouse Lewis lung carcinoma (LLC; ATCC, catalog no. CRL-1642, RRID:CVCL_4358) cell line was purchased from ATCC (RRID:SCR_001672). LLC-eGFP cell line was a gift from Professor Robert Brink. B16F10–3C melanoma cell line was a gift from Professor Wolfgang Weninger. Murine AT-3 mammary carcinoma (RRID:CVCL VR89) cell … WebJan 27, 2024 · Corrected PacBio reads generated from Canu v2.1.1 (Canu, RRID:SCR_015880) 49 were used to predict P. ovata genome size using genomescope2 … e1 香港メンバー

Construction of a chromosome-scale long-read ... - Oxford …

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Rrid:scr_017014

The first long-read nuclear genome assembly of - Nature

WebJan 12, 2024 · JELLYFISH (Jellyfish, RRID:SCR_005491) generated a 17-mer distribution and GenomeScope (GenomeScope, RRID:SCR_017014) estimated the size where the main … WebAnalyses were performed using the R software environment (RRID: SCR_001905). For in vitro functional assays, differences between groups were assessed by the Kruskal-Wallis and Dunn’s multiple comparison test using GraphPad Prism 8 (GraphPad Software, San Diego, CA, USA, RRID: SCR_002798). Three independent experiments were performed for …

Rrid:scr_017014

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WebNov 9, 2024 · Raw reads from genome sequencing and assembly are deposited at the China National Gene Bank under reference number CNP0001160, which contains sample information (CNS0315939), Hi-C raw data (CNX0286336) and stLFR raw data (CNX0286337). The project also has been deposited at NCBI under accession ID …

WebMar 1, 2024 · 2.2. Genome assembly and assessment. Illumina paired-end reads were used as the first quality control by FASTP (fastp, RRID: SCR_016962) [16] with the default parameter.JELLYFISH (v2.2.10) (Jellyfish, RRID: SCR_005491) [17] and PLATANUS (v2.2.2) (Platanus, RRID: SCR_015531) [18] were employed to estimate the genome size based on … WebWe used GenomeScope (RRID:SCR_017014) to conduct a genome survey and visualise the k-mer plot . While we did not deem the k -mer counting method sufficiently accurate for …

WebJan 27, 2024 · Corrected PacBio reads generated from Canu v2.1.1 (Canu, RRID:SCR_015880) 49 were used to predict P. ovata genome size using genomescope2 v2.0 (GenomeScope, RRID:SCR_017014) 21 and findGSE v0.10 ... WebNov 9, 2024 · Raw reads from genome sequencing and assembly are deposited at the China National Gene Bank under reference number CNP0001160, which contains sample …

WebAug 18, 2024 · Four types of noncoding RNAs were annotated using tRNAscan-SE (tRNAscan-SE, RRID:SCR_010835) v1.23 and the Rfam (Rfam, RRID:SCR_007891) …

WebProper Citation: GenomeScope (RRID:SCR_017014) Description: Open source software package for fast genome analysis from unassembled short reads. Used to estimate … e202 受信できません lgWebSep 23, 2024 · The k -mer count histogram was analyzed by the online version of GenomeScope (GenomeScope, RRID:SCR_017014) [ 37] and the heterozygosity of the genome was estimated at 0.0383% ( Supplementary Fig. S2 ). The Long Terminal Repeat (LTR) Assembly Index (LAI) [ 38] metric was used to evaluate assembly continuity in DM … e202 受信できません 三菱WebAug 17, 2024 · The T. molitor genome size was estimated using GenomeScope 15 (GenomeScope, RRID:SCR_017014) v1 with Illumina reads (Table S1, Extended data) and … e2000 e3000 ゲームWebJan 12, 2024 · GenomeScope (GenomeScope, RRID:SCR_017014) v1.0 [40] predicted a smaller genome of 794 Mb 228. from the same data (Figure S1b). 230. CC-BY-NC-ND 4.0 International license made available under a e202 受信できません 雪WebWe used GenomeScope (RRID:SCR_017014) to conduct a genome survey and visualise the k-mer plot . While we did not deem the k -mer counting method sufficiently accurate for genome size estimation [ 38 ] , we used GenomeScope to estimate the genome-wide heterozygosity rates output which was 0.869–0.889%. e202 受信できません 引っ越しWebSep 19, 2024 · Here, we present a highly contiguous, fully phased, chromosome-level genome of ‘Honeycrisp’ apples, using PacBio HiFi, Omni-C, and Illumina sequencing … e202 受信できません 地デジ 東芝WebApr 14, 2024 · The Epigenomic Services from Diagenode (RRID:SCR_014807) carried out this assay. EPIC methylation array processing. After whole-genome amplification and enzymatic fragmentation, the samples were hybridized to the BeadChip, and scanning was conducted with Illumina iScan (RRID:SCR_016388). Idat files were exported and analyzed … e209 コニシ カタログ